geofetch is a command-line tool that downloads and organizes data and metadata from GEO and SRA. When given one or more GEO/SRA accessions,
- Download either raw or processed data from either SRA or GEO
- Produce a standardized PEP sample table. This makes it really easy to run looper-compatible pipelines on public datasets by handling data acquisition and metadata formatting and standardization for you.
- Prepare a project to run with sraconvert to convert SRA files into FASTQ files.
geofetch runs on the command line. This command will download the metadata for the given GSE number.
geofetch -i GSE95654
You can add
--just-metadata if you don't want to download the raw SRA files.
geofetch -i GSE95654 --just-metadata