geofetch is a command-line tool that downloads and organizes data and metadata from GEO and SRA. When given one or more GEO/SRA accessions,
- Download either raw or processed data from either GEO or SRA
- Produces a standardized PEP sample annotation sheet of public metadata. This makes it really easy to run looper-compatible pipelines on public datasets by handling data acquisition and metadata formatting and standardization for you.
geofetch runs on the command line. This command will download the metadata for the given GSE number.
geofetch -i GSE95654
You can add
--just-metadata if you don't want to download the raw SRA files.
geofetch -i GSE95654 --just-metadata